I agree, I saw this system being taken apart at a local specialist. It`s pretty different.
The 3.8 isn`t just 300cc more;
The coils as you know are different, and obviously the bore and stroke (up from 93.4mm x 86mm to 93.5mm x 90mm).
The inlet and exhaust valves are slightly larger, the air intake system has been revised to improve airflow, the crankshaft is new and the flywheel is lighter.
Just to finish, there are new aluminium pistons which allow the compression to go up from 10:1 to 10.5:1
All this is how they get extra 25Bhp and 30lb/ft from it.
Makes the six hamster wheels under the bonnet of my 1990 3.6 seem a bit low-tech
The point is, that assuming you did have all the bits you would need, and the time and skill to do it, then once the new ECU and wiring loom is in, someone is going to have to reprogram it to accomodate all the "missing" items, as the computer would be expecting all the bits from the 3.8
Looking back over what I have just written, I wonder how much is actually gained by the ignition system. The other improvements that Motorsport came up with seem to me to be the lions share of the extra power.
Ivan.